connor-lab/singularity-recipes:taxonkit

$ singularity pull shub://connor-lab/singularity-recipes:taxonkit

Singularity Recipe

Bootstrap: docker
From: alpine:3.8

%post
    apk update
    apk upgrade
    apk add bash bzip2-dev curl git ncurses-dev xz-dev zlib-dev
    apk add python3

    curl -fsSL ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz | tar -xz names.dmp nodes.dmp
   
    mkdir -p /opt/taxonkit

    mv *.dmp /opt/taxonkit  

    curl -fsSL 'https://github.com/shenwei356/taxonkit/releases/download/v0.3.0/taxonkit_linux_amd64.tar.gz' | tar -xz -C /usr/local/bin/

    git clone https://github.com/connor-lab/centrifuge-summary
    cd centrifuge-summary
    mv centrifuge-summary /usr/local/bin/

%environment
    export TAXONKIT_DB=/opt/taxonkit

%labels
    Maintainer m-bull
    Version taxonkit-0.3.0

Collection


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Metrics

key value
id /containers/connor-lab-singularity-recipes-taxonkit
collection name connor-lab/singularity-recipes
branch master
tag taxonkit
commit 59274c17feebde4d6f578522e21ef0f8db8bc800
version (container hash) ef3a87ee373ed05e56e1198ffbf64dd4
build date 2019-02-07T19:57:01.361Z
size (MB) 395
size (bytes) 69005343
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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