connor-lab/singularity-recipes:taxonkit
$ singularity pull shub://connor-lab/singularity-recipes:taxonkit
Singularity Recipe
Bootstrap: docker
From: alpine:3.8
%post
apk update
apk upgrade
apk add bash bzip2-dev curl git ncurses-dev xz-dev zlib-dev
apk add python3
curl -fsSL ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz | tar -xz names.dmp nodes.dmp
mkdir -p /opt/taxonkit
mv *.dmp /opt/taxonkit
curl -fsSL 'https://github.com/shenwei356/taxonkit/releases/download/v0.3.0/taxonkit_linux_amd64.tar.gz' | tar -xz -C /usr/local/bin/
git clone https://github.com/connor-lab/centrifuge-summary
cd centrifuge-summary
mv centrifuge-summary /usr/local/bin/
%environment
export TAXONKIT_DB=/opt/taxonkit
%labels
Maintainer m-bull
Version taxonkit-0.3.0
Collection
- Name: connor-lab/singularity-recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/connor-lab-singularity-recipes-taxonkit |
collection name | connor-lab/singularity-recipes |
branch | master |
tag | taxonkit |
commit | 59274c17feebde4d6f578522e21ef0f8db8bc800 |
version (container hash) | ef3a87ee373ed05e56e1198ffbf64dd4 |
build date | 2019-02-07T19:57:01.361Z |
size (MB) | 395 |
size (bytes) | 69005343 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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