connor-lab/singularity-recipes:mlst

$ singularity pull shub://connor-lab/singularity-recipes:mlst

Singularity Recipe

Bootstrap: docker
From: centos:latest


%post
    yum -y update

    yum install -y git make
    yum install -y bzip2 bzip2-devel gcc ncurses-devel perl-App-cpanminus unzip xz-devel zlib-devel

    cpanm Moo List::MoreUtils JSON Time::Piece

    curl -fsSL 'https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz' | tar -xz -C /usr/local/bin
    find /usr/local/bin/ncbi-blast*/bin -maxdepth 1 -executable -type f -exec ln -s {} /usr/local/bin \;

    git clone https://github.com/tseemann/mlst.git /usr/local/bin/mlst-latest
    ln -s /usr/local/bin/mlst-latest/bin/* /usr/local/bin

%labels
    Maintainer m-bull
    Version mlst-latest

Collection


View on Datalad

Metrics

key value
id /containers/connor-lab-singularity-recipes-mlst
collection name connor-lab/singularity-recipes
branch master
tag mlst
commit 277703bb17d3d079beb249830ce2f3ff58c2a1eb
version (container hash) 4e2c4581b09a0521fa22c568fd08ac18
build date 2019-02-07T15:45:22.821Z
size (MB) 1326
size (bytes) 466685983
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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