connor-lab/singularity-recipes:mlst
$ singularity pull shub://connor-lab/singularity-recipes:mlst
Singularity Recipe
Bootstrap: docker
From: centos:latest
%post
yum -y update
yum install -y git make
yum install -y bzip2 bzip2-devel gcc ncurses-devel perl-App-cpanminus unzip xz-devel zlib-devel
cpanm Moo List::MoreUtils JSON Time::Piece
curl -fsSL 'https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz' | tar -xz -C /usr/local/bin
find /usr/local/bin/ncbi-blast*/bin -maxdepth 1 -executable -type f -exec ln -s {} /usr/local/bin \;
git clone https://github.com/tseemann/mlst.git /usr/local/bin/mlst-latest
ln -s /usr/local/bin/mlst-latest/bin/* /usr/local/bin
%labels
Maintainer m-bull
Version mlst-latest
Collection
- Name: connor-lab/singularity-recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/connor-lab-singularity-recipes-mlst |
collection name | connor-lab/singularity-recipes |
branch | master |
tag | mlst |
commit | 277703bb17d3d079beb249830ce2f3ff58c2a1eb |
version (container hash) | 4e2c4581b09a0521fa22c568fd08ac18 |
build date | 2019-02-07T15:45:22.821Z |
size (MB) | 1326 |
size (bytes) | 466685983 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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