connor-lab/singularity-recipes:minimap2
$ singularity pull shub://connor-lab/singularity-recipes:minimap2
Singularity Recipe
Bootstrap: docker
From: alpine:3.8
%post
apk update
apk upgrade
apk add git make
apk add bash gcc bzip2-dev libc-dev ncurses-dev openjdk8-jre-base xz-dev zlib-dev
git clone https://github.com/lh3/minimap2 /tmp/minimap2
cd /tmp/minimap2
make
mv /tmp/minimap2/minimap2 /usr/local/bin/
rm -rf /tmp/minimap2
wget https://github.com/samtools/samtools/releases/download/1.8/samtools-1.8.tar.bz2 -O /tmp/samtools.tar.bz2
cd /tmp
tar xvjf samtools.tar.bz2
cd samtools-1.8 && ./configure && make && make install
wget https://github.com/broadinstitute/picard/releases/download/2.18.14/picard.jar -O /usr/local/bin/picard.jar
wget https://raw.githubusercontent.com/connor-lab/singularity-recipes/master/scripts/picard -O /usr/local/bin/picard
chmod 775 /usr/local/bin/picard
%labels
Maintainer m-bull
Version minimap2-latest
Collection
- Name: connor-lab/singularity-recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/connor-lab-singularity-recipes-minimap2 |
collection name | connor-lab/singularity-recipes |
branch | master |
tag | minimap2 |
commit | 277703bb17d3d079beb249830ce2f3ff58c2a1eb |
version (container hash) | 283c967f6f1a9abeb4bf4d0ed79857eb |
build date | 2019-02-07T15:45:22.828Z |
size (MB) | 271 |
size (bytes) | 115015711 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.