connor-lab/singularity-recipes:canu

$ singularity pull shub://connor-lab/singularity-recipes:canu

Singularity Recipe

Bootstrap: docker
From: alpine:3.8

%post
    apk update
    apk upgrade
    apk add git make
    apk add bash curl openjdk8-jre-base perl zlib-dev
    

    cd /usr/local/bin
    curl -fsSL 'https://github.com/marbl/canu/releases/download/v1.8/canu-1.8.Linux-amd64.tar.xz' | tar -xJ
    find /usr/local/bin/canu-1.8 -maxdepth 3 -perm /u=x -type f -exec ln -s {} /usr/local/bin/ \;

Collection


View on Datalad

Metrics

key value
id /containers/connor-lab-singularity-recipes-canu
collection name connor-lab/singularity-recipes
branch master
tag canu
commit a43cefa7f62c25a6726a49f5634f285ba75ea6a9
version (container hash) 23d139eb7f9377eedd448af284aea408
build date 2021-02-16T02:45:34.861Z
size (MB) 306
size (bytes) 128073759
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.