connor-lab/singularity-recipes:bbtools

$ singularity pull shub://connor-lab/singularity-recipes:bbtools

Singularity Recipe

Bootstrap: docker
From: alpine:3.8

%post
    apk update
    apk upgrade
    apk add git make
    apk add bash curl openjdk8-jre-base zlib-dev
    

    cd /usr/local/bin
    curl -fsSL 'https://downloads.sourceforge.net/project/bbmap/BBMap_38.25.tar.gz' | tar -xz
    find /usr/local/bin/bbmap -maxdepth 1 -perm /u=x -type f -exec ln -s {} /usr/local/bin/ \;

Collection


View on Datalad

Metrics

key value
id /containers/connor-lab-singularity-recipes-bbtools
collection name connor-lab/singularity-recipes
branch master
tag bbtools
commit a43cefa7f62c25a6726a49f5634f285ba75ea6a9
version (container hash) 5b6377dc4333b18e85a4ae00bda536d1
build date 2019-02-07T11:31:15.353Z
size (MB) 126
size (bytes) 72605727
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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