chuanfuyap/Convenient-Modeller:latest

$ singularity pull shub://chuanfuyap/Convenient-Modeller:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%post
apt -y update
apt-get -y install autotools-dev
apt-get -y install autoconf
apt-get -y install default-jre
apt-get -y install unzip
apt-get -y install wget
apt-get -y install build-essential
apt-get -y install libxml2-dev
apt-get -y install libtool
apt-get -y install pkg-config

cd
wget -O sundials-2.4.0.tar.gz https://computation.llnl.gov/projects/sundials/download/sundials-2.4.0.tar.gz
tar -xzf sundials-2.4.0.tar.gz
cd sundials-2.4.0
./configure --enable-shared CFLAGS=-fPIC
make
make install

cd
wget -O libSBML-5.13.0-core-src.tar.gz https://sourceforge.net/projects/sbml/files/libsbml/5.13.0/stable/libSBML-5.13.0-core-src.tar.gz/download
tar -xzf libSBML-5.13.0-core-src.tar.gz
cd libsbml-5.13.0
./configure
make
make install

cd
wget -O SBML_odeSolver.zip https://github.com/raim/SBML_odeSolver/archive/master.zip
unzip SBML_odeSolver.zip
cd SBML_odeSolver-master
autoreconf -i
./configure
make
make install

cd /opt
wget -O soslibJNIC.zip https://github.com/chuanfuyap/soslibJNIC/archive/master.zip
unzip soslibJNIC.zip
cd soslibJNIC-master/
make
mkdir /opt/lib
cp ./dist/sosLibLinkv3.so /opt/lib/
rm -rf soslibJNIC-master


mkdir /opt/convenient-modeller
cd /opt/convenient-modeller
wget -O Convenient-Modeller.zip https://github.com/chuanfuyap/Convenient-Modeller/archive/master.zip
unzip Convenient-Modeller.zip 'Convenient-Modeller-master/dist/*'

mv -v Convenient-Modeller-master/dist/* .


%environment
export LD_LIBRARY_PATH=/usr/local/lib

%runscript
exec java -jar /opt/convenient-modeller/Convenient-Modeller.jar gui

Collection


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Metrics

key value
id /containers/chuanfuyap-Convenient-Modeller-latest
collection name chuanfuyap/Convenient-Modeller
branch master
tag latest
commit 35c2a4685158e81e9f05c82cb644f8b8d80974ce
version (container hash) 87030bc6b5ba889a3de3b93223a4e211
build date 2020-05-11T17:52:32.045Z
size (MB) 984.0
size (bytes) 340660255
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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