chrarnold/Singularity_images:variant-calling_r
$ singularity pull shub://chrarnold/Singularity_images:variant-calling_r
Singularity Recipe
Bootstrap: docker
FROM: bioconductor/release_core2
%labels
Version v1.0
%help
Singularity image for the variant calling pipeline (R 3.5.1 + all packages + java)
%post
R --slave -e "install.packages('tools')"
R --slave -e "install.packages('tidyverse')"
R --slave -e "install.packages('grid')"
R --slave -e "install.packages('gplots')"
R --slave -e "install.packages('reshape')"
R --slave -e "install.packages('gsalib')"
apt update
apt install --yes default-jre
%environment
%test
R --version
Collection
- Name: chrarnold/Singularity_images
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/chrarnold-Singularity_images-variant-calling_r |
collection name | chrarnold/Singularity_images |
branch | master |
tag | variant-calling_r |
commit | f7a02b158ba8b5c5372644c873d9dc006952d571 |
version (container hash) | 0a1d1c34809b285e67468663b1b51791 |
build date | 2019-03-06T12:46:32.643Z |
size (MB) | 2293 |
size (bytes) | 809537567 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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