chrarnold/Singularity_images:variant-calling_r

$ singularity pull shub://chrarnold/Singularity_images:variant-calling_r

Singularity Recipe

Bootstrap: docker
FROM: bioconductor/release_core2

%labels
  Version v1.0

%help
  Singularity image for the variant calling pipeline (R 3.5.1 + all packages + java)



%post

  R --slave -e "install.packages('tools')"
  R --slave -e "install.packages('tidyverse')"
  R --slave -e "install.packages('grid')"
  R --slave -e "install.packages('gplots')"
  R --slave -e "install.packages('reshape')"
  R --slave -e "install.packages('gsalib')"
  apt update
  apt install --yes default-jre

%environment

%test
  R --version

Collection


View on Datalad

Metrics

key value
id /containers/chrarnold-Singularity_images-variant-calling_r
collection name chrarnold/Singularity_images
branch master
tag variant-calling_r
commit f7a02b158ba8b5c5372644c873d9dc006952d571
version (container hash) 0a1d1c34809b285e67468663b1b51791
build date 2019-03-06T12:46:32.643Z
size (MB) 2293
size (bytes) 809537567
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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