chrarnold/Singularity_images:rna_seq_r

$ singularity pull shub://chrarnold/Singularity_images:rna_seq_r

Singularity Recipe

Bootstrap: docker
FROM: bioconductor/release_core2

%labels
  Version v1.0

%help
  Singularity image for the RNA-Seq pipeline (R 3.5.1 + all packages)



%post

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('GenomicRanges')"

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('rtracklayer')"

  R --slave -e "install.packages('checkmate')"
  R --slave -e "install.packages('futile.logger')"
  R --slave -e "install.packages('tidyverse')"
  R --slave -e "install.packages('reshape2')"
  R --slave -e "install.packages('RColorBrewer')"
  R --slave -e "install.packages('grDevices')"
  R --slave -e "install.packages('matrixStats')"
  R --slave -e "install.packages('rlist')"
  R --slave -e "install.packages('gridExtra')"
  R --slave -e "install.packages('stringr')"
  R --slave -e "install.packages('scales')"
  R --slave -e "install.packages('stats')"

%environment

%test
  R --version

Collection


View on Datalad

Metrics

key value
id /containers/chrarnold-Singularity_images-rna_seq_r
collection name chrarnold/Singularity_images
branch master
tag rna_seq_r
commit d9183c9ae296b4111481f33fd776bacfe798cd0d
version (container hash) cad9eb8abcf063525e4256c1c7d0e8e4
build date 2019-11-14T17:15:23.997Z
size (MB) 1934
size (bytes) 680722463
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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