chrarnold/Singularity_images:rna_seq_fastqc
$ singularity pull shub://chrarnold/Singularity_images:rna_seq_fastqc
Singularity Recipe
Bootstrap: docker
FROM: continuumio/miniconda3
%labels
Version v1.0
%help
Singularity image for the RNA-Seq pipeline (Python 3)
%post
# Add channels for Bioconda
/opt/conda/bin/conda config --add channels defaults
/opt/conda/bin/conda config --add channels bioconda
/opt/conda/bin/conda config --add channels conda-forge
# Install the tools
/opt/conda/bin/conda install --yes fastqc
%environment
%test
# fastqc --version
Collection
- Name: chrarnold/Singularity_images
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/chrarnold-Singularity_images-rna_seq_fastqc |
collection name | chrarnold/Singularity_images |
branch | master |
tag | rna_seq_fastqc |
commit | c159994feb3ccb8cafaac79ab4c312a73e5aa015 |
version (container hash) | d1d42b1ecde63da3cef89fd99da67c0b |
build date | 2018-12-21T17:01:16.896Z |
size (MB) | 1333 |
size (bytes) | 701100063 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.