chrarnold/Singularity_images:atac_seq_r

$ singularity pull shub://chrarnold/Singularity_images:atac_seq_r

Singularity Recipe

Bootstrap: docker
FROM: bioconductor/release_core2

%labels
  Version v1.0

%help
  Singularity image for the ATAC-Seq pipeline (R 3.5.1 + all packages)



%post

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('DESeq2')"

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('GenomicRanges')"

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('Rsamtools')"

  R --slave -e "source('https://bioconductor.org/biocLite.R'); \
          biocLite('DiffBind')"


  R --slave -e "install.packages('checkmate')"
  R --slave -e "install.packages('futile.logger')"
  R --slave -e "install.packages('tidyverse')"
  R --slave -e "install.packages('reshape2')"
  R --slave -e "install.packages('RColorBrewer')"
  R --slave -e "install.packages('grDevices')"
  R --slave -e "install.packages('matrixStats')"
  R --slave -e "install.packages('rlist')"
  R --slave -e "install.packages('gridExtra')"
  R --slave -e "install.packages('stringr')"
  R --slave -e "install.packages('scales')"
  R --slave -e "install.packages('stats')"

%environment

%test
  R --version

Collection


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Metrics

key value
id /containers/chrarnold-Singularity_images-atac_seq_r
collection name chrarnold/Singularity_images
branch master
tag atac_seq_r
commit e8680e0828142d6350e90c51bb10c116862eb6f4
version (container hash) bfb85e7e2ad594ec5e234175adaff44e
build date 2021-03-16T15:52:46.662Z
size (MB) 2092
size (bytes) 746782751
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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