chrarnold/Singularity_images:atac_seq_r
$ singularity pull shub://chrarnold/Singularity_images:atac_seq_r
Singularity Recipe
Bootstrap: docker
FROM: bioconductor/release_core2
%labels
Version v1.0
%help
Singularity image for the ATAC-Seq pipeline (R 3.5.1 + all packages)
%post
R --slave -e "source('https://bioconductor.org/biocLite.R'); \
biocLite('DESeq2')"
R --slave -e "source('https://bioconductor.org/biocLite.R'); \
biocLite('GenomicRanges')"
R --slave -e "source('https://bioconductor.org/biocLite.R'); \
biocLite('Rsamtools')"
R --slave -e "source('https://bioconductor.org/biocLite.R'); \
biocLite('DiffBind')"
R --slave -e "install.packages('checkmate')"
R --slave -e "install.packages('futile.logger')"
R --slave -e "install.packages('tidyverse')"
R --slave -e "install.packages('reshape2')"
R --slave -e "install.packages('RColorBrewer')"
R --slave -e "install.packages('grDevices')"
R --slave -e "install.packages('matrixStats')"
R --slave -e "install.packages('rlist')"
R --slave -e "install.packages('gridExtra')"
R --slave -e "install.packages('stringr')"
R --slave -e "install.packages('scales')"
R --slave -e "install.packages('stats')"
%environment
%test
R --version
Collection
- Name: chrarnold/Singularity_images
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/chrarnold-Singularity_images-atac_seq_r |
collection name | chrarnold/Singularity_images |
branch | master |
tag | atac_seq_r |
commit | e8680e0828142d6350e90c51bb10c116862eb6f4 |
version (container hash) | bfb85e7e2ad594ec5e234175adaff44e |
build date | 2021-03-16T15:52:46.662Z |
size (MB) | 2092 |
size (bytes) | 746782751 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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