chrarnold/Singularity_images:atac_seq_conda
$ singularity pull shub://chrarnold/Singularity_images:atac_seq_conda
Singularity Recipe
Bootstrap: docker
FROM: continuumio/miniconda3
%labels
Version v1.0
%help
Singularity image for the ATAC-Seq pipeline (Python 3)
%post
# Add channels for Bioconda
/opt/conda/bin/conda config --add channels defaults
/opt/conda/bin/conda config --add channels bioconda
/opt/conda/bin/conda config --add channels conda-forge
# Install the tools
/opt/conda/bin/conda install --yes bedtools samtools fastqc trimmomatic multiqc bowtie2 picard gatk deeptools
%environment
%test
# bedtools --version
# samtools --version
# fastqc --version
# trimmomatic -version
# bowtie2 --version
# picard SortSam --version
# gatk --version
# deeptools --version
Collection
- Name: chrarnold/Singularity_images
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/chrarnold-Singularity_images-atac_seq_conda |
collection name | chrarnold/Singularity_images |
branch | master |
tag | atac_seq_conda |
commit | d84f44d8358346a0756b906102d58c8beed08f03 |
version (container hash) | 83579cc949d8612dcb68e7a64126c271 |
build date | 2021-03-24T08:58:13.269Z |
size (MB) | 4095 |
size (bytes) | 1817354271 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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