chrarnold/Singularity_images:atac_seq_conda

$ singularity pull shub://chrarnold/Singularity_images:atac_seq_conda

Singularity Recipe

Bootstrap: docker
FROM: continuumio/miniconda3

%labels
  Version v1.0

%help
  Singularity image for the ATAC-Seq pipeline (Python 3)



%post

  # Add channels for Bioconda
  /opt/conda/bin/conda config --add channels defaults
  /opt/conda/bin/conda config --add channels bioconda
  /opt/conda/bin/conda config --add channels conda-forge

  # Install the tools
  /opt/conda/bin/conda install --yes bedtools samtools fastqc trimmomatic multiqc bowtie2 picard gatk deeptools

%environment

%test
   # bedtools --version
   # samtools --version
   # fastqc --version
   # trimmomatic -version
   # bowtie2 --version
   # picard SortSam --version
   # gatk --version
   # deeptools --version

Collection


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Metrics

key value
id /containers/chrarnold-Singularity_images-atac_seq_conda
collection name chrarnold/Singularity_images
branch master
tag atac_seq_conda
commit d84f44d8358346a0756b906102d58c8beed08f03
version (container hash) 83579cc949d8612dcb68e7a64126c271
build date 2021-03-24T08:58:13.269Z
size (MB) 4095
size (bytes) 1817354271
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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