ch-n/DRG_fMRI_Pipeline:latest
$ singularity pull shub://ch-n/DRG_fMRI_Pipeline:latest
Singularity Recipe
Bootstrap: docker
From: neurodebian:bionic
%labels
CREATOR Christopher Nauroth
LICENSE MIT
%environment
PATH="/usr/local/anaconda/bin:$PATH"
%files
classes.py
segmentation_functions.py
segmentation_main.py
DRG_fMRI_Pipeline.yml
%post
# install debian packages
apt-get update
apt-get install -y eatmydata
eatmydata apt-get install -y wget bzip2 \
ca-certificates libglib2.0-0 libxext6 libsm6 libxrender1 \
git git-annex-standalone
apt-get clean
# install anaconda
if [ ! -d /usr/local/anaconda ]; then
wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh \
-O ~/anaconda.sh && \
bash ~/anaconda.sh -b -p /usr/local/anaconda && \
rm ~/anaconda.sh
fi
# set anaconda path
export PATH="/usr/local/anaconda/bin:$PATH"
#create environment
conda env create -f DRG_fMRI_Pipeline.yml
%runscript
eval "$(conda shell.bash hook)"
conda activate DRG_fMRI_Pipeline
python /segmentation_main.py
Collection
- Name: ch-n/DRG_fMRI_Pipeline
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/ch-n-DRG_fMRI_Pipeline-latest |
collection name | ch-n/DRG_fMRI_Pipeline |
branch | master |
tag | latest |
commit | 514d7358dfd52c99f8e1eaf286b57509b4a961af |
version (container hash) | 2fda5a19d2cbdc203b51f41b4ab5e63a |
build date | 2020-01-27T09:48:42.752Z |
size (MB) | 4141.0 |
size (bytes) | 1817554975 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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