ch-n/DRG_fMRI_Pipeline:latest

$ singularity pull shub://ch-n/DRG_fMRI_Pipeline:latest

Singularity Recipe

Bootstrap: docker
From: neurodebian:bionic

%labels
	CREATOR Christopher Nauroth
	LICENSE MIT

%environment
	PATH="/usr/local/anaconda/bin:$PATH"

%files
	classes.py
	segmentation_functions.py
	segmentation_main.py
	DRG_fMRI_Pipeline.yml

%post
	 # install debian packages
	apt-get update
	apt-get install -y eatmydata
	eatmydata apt-get install -y wget bzip2 \
	  ca-certificates libglib2.0-0 libxext6 libsm6 libxrender1 \
	  git git-annex-standalone
	apt-get clean

	# install anaconda
	if [ ! -d /usr/local/anaconda ]; then
	     wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh \
	        -O ~/anaconda.sh && \
	     bash ~/anaconda.sh -b -p /usr/local/anaconda && \
	     rm ~/anaconda.sh
	fi
    
	# set anaconda path
	export PATH="/usr/local/anaconda/bin:$PATH"

	#create environment
	conda env create -f DRG_fMRI_Pipeline.yml

%runscript
	eval "$(conda shell.bash hook)"
	conda activate DRG_fMRI_Pipeline
	python /segmentation_main.py

Collection


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key value
id /containers/ch-n-DRG_fMRI_Pipeline-latest
collection name ch-n/DRG_fMRI_Pipeline
branch master
tag latest
commit 514d7358dfd52c99f8e1eaf286b57509b4a961af
version (container hash) 2fda5a19d2cbdc203b51f41b4ab5e63a
build date 2020-01-27T09:48:42.752Z
size (MB) 4141.0
size (bytes) 1817554975
SIF Download URL (please use pull with shub://)
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