cbbs-md/container-nipype:latest
$ singularity pull shub://cbbs-md/container-nipype:latest
Singularity Recipe
# Generated by: Neurodocker version 0.7.0+0.gdc97516.dirty
# Timestamp: 2020/12/18 13:08:20 UTC
#
# Thank you for using Neurodocker. If you discover any issues
# or ways to improve this software, please submit an issue or
# pull request on our GitHub repository:
#
# https://github.com/ReproNim/neurodocker
Bootstrap: docker
From: debian:stretch
%post
su - root
export ND_ENTRYPOINT="/neurodocker/startup.sh"
apt-get update -qq
apt-get install -y -q --no-install-recommends \
apt-utils \
bzip2 \
ca-certificates \
curl \
locales \
unzip
apt-get clean
rm -rf /var/lib/apt/lists/*
sed -i -e 's/# en_US.UTF-8 UTF-8/en_US.UTF-8 UTF-8/' /etc/locale.gen
dpkg-reconfigure --frontend=noninteractive locales
update-locale LANG="en_US.UTF-8"
chmod 777 /opt && chmod a+s /opt
mkdir -p /neurodocker
if [ ! -f "$ND_ENTRYPOINT" ]; then
echo '#!/usr/bin/env bash' >> "$ND_ENTRYPOINT"
echo 'set -e' >> "$ND_ENTRYPOINT"
echo 'export USER="${USER:=`whoami`}"' >> "$ND_ENTRYPOINT"
echo 'if [ -n "$1" ]; then "$@"; else /usr/bin/env bash; fi' >> "$ND_ENTRYPOINT";
fi
chmod -R 777 /neurodocker && chmod a+s /neurodocker
export PATH="/opt/miniconda-latest/bin:$PATH"
echo "Downloading Miniconda installer ..."
conda_installer="/tmp/miniconda.sh"
curl -fsSL --retry 5 -o "$conda_installer" https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash "$conda_installer" -b -p /opt/miniconda-latest
rm -f "$conda_installer"
conda update -yq -nbase conda
conda config --system --prepend channels conda-forge
conda config --system --set auto_update_conda false
conda config --system --set show_channel_urls true
sync && conda clean -y --all && sync
conda create -y -q --name neuro
conda install -y -q --name neuro \
"python=3.6" \
"traits"
sync && conda clean -y --all && sync
bash -c "source activate neuro
pip install --no-cache-dir \
"nipype""
rm -rf ~/.cache/pip/*
sync
echo '{
\n "pkg_manager": "apt",
\n "instructions": [
\n [
\n "base",
\n "debian:stretch"
\n ],
\n [
\n "user",
\n "root"
\n ],
\n [
\n "_header",
\n {
\n "version": "generic",
\n "method": "custom"
\n }
\n ],
\n [
\n "miniconda",
\n {
\n "create_env": "neuro",
\n "conda_install": [
\n "python=3.6",
\n "traits"
\n ],
\n "pip_install": [
\n "nipype"
\n ]
\n }
\n ]
\n ]
\n}' > /neurodocker/neurodocker_specs.json
%environment
export LANG="en_US.UTF-8"
export LC_ALL="en_US.UTF-8"
export ND_ENTRYPOINT="/neurodocker/startup.sh"
export CONDA_DIR="/opt/miniconda-latest"
export PATH="/opt/miniconda-latest/bin:$PATH"
%runscript
/neurodocker/startup.sh "$@"
Collection
- Name: cbbs-md/container-nipype
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/cbbs-md-container-nipype-latest |
collection name | cbbs-md/container-nipype |
branch | main |
tag | latest |
commit | 43f9e13c5d49e7217740295c370035603f3e4764 |
version (container hash) | 82c7966c5288f256274442a8d683c6c0 |
build date | 2020-12-18T15:29:19.521Z |
size (MB) | 955.0 |
size (bytes) | 322478111 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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