bsiranosian/bens_1337_workflows:kraken2_processing
$ singularity pull shub://bsiranosian/bens_1337_workflows:kraken2_processing
Singularity Recipe
BootStrap: docker
From: ubuntu:16.04
# this command assumes at least singularity 2.3
%environment
PATH="/usr/local/anaconda/bin:$PATH"
%post
apt-get update
apt-get install -y locales wget build-essential libicu-dev
# install anaconda
if [ ! -d /usr/local/anaconda ]; then
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
-O ~/anaconda.sh && \
bash ~/anaconda.sh -b -p /usr/local/anaconda && \
rm ~/anaconda.sh
fi
export PATH="/usr/local/anaconda/bin:$PATH"
conda install -y -c conda-forge -c r r-ggplot2 r-ggpubr r-rcolorbrewer r-reshape2 r-vegan r-stringi
%runscript
exec /bin/bash
Collection
- Name: bsiranosian/bens_1337_workflows
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bsiranosian-bens_1337_workflows-kraken2_processing |
collection name | bsiranosian/bens_1337_workflows |
branch | master |
tag | kraken2_processing |
commit | e2af0cef1a301986b5f683c971eb56c0793a2882 |
version (container hash) | 12e35e20b488388248ab7c25db33cf33 |
build date | 2020-01-27T04:49:00.386Z |
size (MB) | 2171 |
size (bytes) | 963723295 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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