bsiranosian/bens_1337_workflows:kraken2

$ singularity pull shub://bsiranosian/bens_1337_workflows:kraken2

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04


# this command assumes at least singularity 2.3
%environment
    PATH="/usr/local/anaconda/bin:$PATH"

%post 
    apt-get update
    apt-get install -y locales wget build-essential libicu-dev

    # install anaconda
    if [ ! -d /usr/local/anaconda ]; then
         wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
            -O ~/anaconda.sh && \
         bash ~/anaconda.sh -b -p /usr/local/anaconda && \
         rm ~/anaconda.sh
    fi
        export PATH="/usr/local/anaconda/bin:$PATH"

    conda install -y -c bioconda -c conda-forge -c r python=3.6 kraken2 bbmap

%runscript
   exec /bin/bash

Collection


View on Datalad

Metrics

key value
id /containers/bsiranosian-bens_1337_workflows-kraken2
collection name bsiranosian/bens_1337_workflows
branch master
tag kraken2
commit e2af0cef1a301986b5f683c971eb56c0793a2882
version (container hash) 2428de4a97458af99ba97a302ca01357
build date 2020-09-01T17:23:18.066Z
size (MB) 1913
size (bytes) 975716383
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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