bsiranosian/bens_1337_workflows:fastq-pair

$ singularity pull shub://bsiranosian/bens_1337_workflows:fastq-pair

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04


# this command assumes at least singularity 2.3
%environment
    PATH="/fastq-pair-master/:$PATH"

%post 
    apt-get update
    apt-get install -y wget build-essential unzip

    # get from github
    wget https://github.com/linsalrob/fastq-pair/archive/master.zip
    unzip master.zip
    cd fastq-pair-master
    gcc *.c -o fastq_pair    
    export PATH="/fastq-pair-master/:$PATH"

    # can test with this line
    # fastq_pair -t 1000 /fastq-pair-master/test/left.fastq /fastq-pair-master/test/right.fastq

%runscript
   exec /bin/bash

Collection

• Name: bsiranosian/bens_1337_workflows
• License: None

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