bsiranosian/bens_1337_workflows:fastq-dump

$ singularity pull shub://bsiranosian/bens_1337_workflows:fastq-dump

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04


# this command assumes at least singularity 2.3
%environment
    PATH="/usr/local/anaconda/bin:$PATH"

%post 
    apt-get update
    apt-get install -y wget build-essential

    # install anaconda
    if [ ! -d /usr/local/anaconda ]; then
         wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
            -O ~/anaconda.sh && \
         bash ~/anaconda.sh -b -p /usr/local/anaconda && \
         rm ~/anaconda.sh
    fi
        export PATH="/usr/local/anaconda/bin:$PATH"

    conda install -y -c bioconda parallel-fastq-dump

%runscript
   exec /bin/bash

Collection


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Metrics

key value
id /containers/bsiranosian-bens_1337_workflows-fastq-dump
collection name bsiranosian/bens_1337_workflows
branch master
tag fastq-dump
commit 1448ba7acbf363ac644c6ea8b8718fb65f655d19
version (container hash) 4f684dfb810886d4358775bfe0f8219e
build date 2020-10-02T18:43:49.616Z
size (MB) 884
size (bytes) 409825311
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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