brucemoran/Singularity:aracne-ap.centos7
$ singularity pull shub://brucemoran/Singularity:aracne-ap.centos7
Singularity Recipe
Bootstrap:shub
From:brucemoran/Singularity:centos7-java8
%help
Container for ARACNe-AP v0.1 30967ea10494fcb42c2bfd00604c94907da5397b
%post
export JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.201.b09-2.el7_6.x86_64
##install Apache ANT
cd /usr/local
wget https://www-eu.apache.org/dist/ant/binaries/apache-ant-1.9.13-bin.tar.gz
tar -xf apache-ant-1.9.13-bin.tar.gz
echo 'export ANT_HOME=/usr/local/apache-ant-1.9.13' >> $SINGULARITY_ENVIRONMENT
echo 'export PATH=$PATH:${ANT_HOME}/bin' >> $SINGULARITY_ENVIRONMENT
export ANT_HOME=/usr/local/apache-ant-1.9.13
export PATH=$PATH:${ANT_HOME}/bin
git clone https://github.com/califano-lab/ARACNe-AP
cd ARACNe-AP
git reset --hard 30967ea10494fcb42c2bfd00604c94907da5397b
ant main
##create executable
##NB allows Xmx for resource allocation only
chmod a+x /usr/local/ARACNe-AP/dist/aracne.jar
echo -e "#! /bin/bash\njavamem=""\nif [[ \$1 =~ "-Xmx" ]];then javamem=\$1; shift 1; fi\nexec java \$javamem -jar /usr/local/ARACNe-AP/dist/aracne.jar "\$@"" > /usr/local/bin/ARACNe-AP
chmod a+x /usr/local/bin/ARACNe-AP
Collection
- Name: brucemoran/Singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/brucemoran-Singularity-aracne-ap.centos7 |
collection name | brucemoran/Singularity |
branch | master |
tag | aracne-ap.centos7 |
commit | b30f2442ae976bdf781048107efd8d4b7d6c11f4 |
version (container hash) | e4953ac47e728fcffd015a5f1250eca3 |
build date | 2019-03-13T03:34:53.030Z |
size (MB) | 910 |
size (bytes) | 314417183 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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