bmichanderson/singularity-containers:gapfiller
$ singularity pull shub://bmichanderson/singularity-containers:gapfiller
Singularity Recipe
# Author: B. Anderson
# Singularity recipe for creating a container for using the program GapFiller
Bootstrap: docker
From: debian:7
%labels
MAINTAINER bmichanderson
PROGRAM GapFiller
VERSION 2.1.1
%post
# install dependencies
apt-get update
apt-get upgrade -y
export DEBIAN_FRONTEND=noninteractive
apt-get install -y build-essential gzip make libboost-all-dev tar wget zlib1g zlib1g-dev
# download GapFiller and compile and make
URL=https://sourceforge.net/projects/gapfiller/files/latest/download
wget --no-check-certificate "$URL"
tar -xzf download
rm download
cd gapfiller-2.1.1
./configure; make; make install
cd ..
rm -r gapfiller-2.1.1
#echo "export PATH=$PATH:/gapfiller-2.1.1/src" >> $SINGULARITY_ENVIRONMENT
%help
******************************************************************************
This message is displayed when called as >singularity run-help gapfiller.img
This container is meant to be used for running GapFiller
Execute it as >singularity exec gapfiller.img GapFiller
Check contents by entering it as >singularity shell gapfiller.img
******************************************************************************
Collection
- Name: bmichanderson/singularity-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bmichanderson-singularity-containers-gapfiller |
collection name | bmichanderson/singularity-containers |
branch | master |
tag | gapfiller |
commit | be8c5472a894bc077d53174d06cae0931e7d62bd |
version (container hash) | 9f2687e46f04ecf264f99ce6bafe1501 |
build date | 2019-01-11T19:36:04.242Z |
size (MB) | 580 |
size (bytes) | 177541151 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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