bmichanderson/singularity-containers:gapfiller

$ singularity pull shub://bmichanderson/singularity-containers:gapfiller

Singularity Recipe

# Author: B. Anderson
# Singularity recipe for creating a container for using the program GapFiller

Bootstrap: docker
From: debian:7

%labels
	MAINTAINER bmichanderson
	PROGRAM GapFiller
	VERSION 2.1.1

%post
	# install dependencies
	apt-get update
	apt-get upgrade -y
	export DEBIAN_FRONTEND=noninteractive
	apt-get install -y build-essential gzip make libboost-all-dev tar wget zlib1g zlib1g-dev

	# download GapFiller and compile and make
	URL=https://sourceforge.net/projects/gapfiller/files/latest/download
	wget --no-check-certificate "$URL"
	tar -xzf download
	rm download
	cd gapfiller-2.1.1
	./configure; make; make install
	cd ..
	rm -r gapfiller-2.1.1
	#echo "export PATH=$PATH:/gapfiller-2.1.1/src" >> $SINGULARITY_ENVIRONMENT

%help
	******************************************************************************
	This message is displayed when called as  >singularity run-help gapfiller.img
	This container is meant to be used for running GapFiller
	Execute it as >singularity exec gapfiller.img GapFiller
	Check contents by entering it as >singularity shell gapfiller.img
	******************************************************************************

Collection


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Metrics

key value
id /containers/bmichanderson-singularity-containers-gapfiller
collection name bmichanderson/singularity-containers
branch master
tag gapfiller
commit be8c5472a894bc077d53174d06cae0931e7d62bd
version (container hash) 9f2687e46f04ecf264f99ce6bafe1501
build date 2019-01-11T19:36:04.242Z
size (MB) 580
size (bytes) 177541151
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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