bioinformapping/GOMAP-PlantSpecific:latest
$ singularity pull shub://bioinformapping/GOMAP-PlantSpecific:latest
Singularity Recipe
Bootstrap: docker
From: r-base:latest
%labels
GOMAP_OWNER Wimalanathan Kokulapalan
GOMAP_MAINTAINER Wimalanathan Kokulapalan
GOMAP_PLANT_SPECIFIC_VERSION v0.1
%environment
export LC_ALL=C
export DEBIAN_FRONTEND=noninteractive
export SCRIPT_LOC=/opt/PlantSpecific
%post
export DEBIAN_FRONTEND="noninteractive"
echo "Running post "
apt-get update && \
apt-get install -y python3.9 git
git clone https://github.com/bioinformapping/GOMAP-PlantSpecific.git &&
cp -R GOMAP-PlantSpecific/PlantSpecific /opt/
chmod 755 /opt/PlantSpecific/filterPlantSpecific.R
#Installing the necessary R packages
R -e 'install.packages(c("argparse","data.table","ontologyIndex","tools"), repos="https://mirror.las.iastate.edu/CRAN/", INSTALL_opts="--no-html")'
echo "Completed Post "
%runscript
/opt/PlantSpecific/filterPlantSpecific.R "$@"
Collection
- Name: bioinformapping/GOMAP-PlantSpecific
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bioinformapping-GOMAP-PlantSpecific-latest |
collection name | bioinformapping/GOMAP-PlantSpecific |
branch | main |
tag | latest |
commit | 6e5061737071005f26d454650909d86983116787 |
version (container hash) | 906dc8a9e8128ffe702a4c47893c0b58c6f08acc8db4528db075578856de5c18 |
build date | 2021-02-28T19:44:36.795Z |
size (MB) | 371.66015625 |
size (bytes) | 389713920 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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