biobox-info/Samtools:v1.9

$ singularity pull shub://biobox-info/Samtools:v1.9

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%environment
PATH=/usr/local/src/samtools-1.9:$PATH
export LC_ALL=C.UTF-8
export LANG=C.UTF-8

%post
sed -i "s/archive.ubuntu/de.archive.ubuntu/" /etc/apt/sources.list && \
sed -i "s/security.ubuntu/de.security.ubuntu/" /etc/apt/sources.list && \
apt-get update
apt-get dist-upgrade -y 
apt-get install liblzma-dev libbz2-dev zlib1g-dev libncurses5-dev wget build-essential unzip git -y 
rm -rf /var/lib/apt/lists/*
mkdir -p /usr/local/src
cd /usr/local/src && \
wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2 && \
tar xf samtools-1.9.tar.bz2 && \
rm samtools-1.9.tar.bz2 && \
cd samtools-1.9 && \
./configure && \
make -j 6 && \
make install

%labels
MAINTAINER BioBox
Version v1.0

Collection

• Name: biobox-info/Samtools
• License: None

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