biobox-info/Samtools:latest
$ singularity pull shub://biobox-info/Samtools:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:18.04
%environment
PATH=/usr/local/src/samtools-1.9:$PATH
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
%post
sed -i "s/archive.ubuntu/de.archive.ubuntu/" /etc/apt/sources.list && \
sed -i "s/security.ubuntu/de.security.ubuntu/" /etc/apt/sources.list && \
apt-get update
apt-get dist-upgrade -y
apt-get install liblzma-dev libbz2-dev zlib1g-dev libncurses5-dev wget build-essential unzip git -y
rm -rf /var/lib/apt/lists/*
mkdir -p /usr/local/src
cd /usr/local/src && \
wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2 && \
tar xf samtools-1.9.tar.bz2 && \
rm samtools-1.9.tar.bz2 && \
cd samtools-1.9 && \
./configure && \
make -j 6 && \
make install
%labels
MAINTAINER BioBox
Version v1.0
Collection
- Name: biobox-info/Samtools
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/biobox-info-Samtools-latest |
collection name | biobox-info/Samtools |
branch | master |
tag | latest |
commit | d45965784415a53fe1e81a478c7ae0d7caa56110 |
version (container hash) | c2a2ad6ee46aa4347f7bce5d89e55187e80cc31b07d8119cc04bbeddd986e19c |
build date | 2019-10-21T07:12:07.628Z |
size (MB) | 122.1875 |
size (bytes) | 128122880 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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