biobox-info/Minimap2:latest

$ singularity pull shub://biobox-info/Minimap2:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%environment
PATH=/usr/local/src/minimap2-2.17_x64-linux:$PATH
export LC_ALL=C.UTF-8
export LANG=C.UTF-8

%post
sed -i "s/archive.ubuntu/de.archive.ubuntu/" /etc/apt/sources.list && \
sed -i "s/security.ubuntu/de.security.ubuntu/" /etc/apt/sources.list && \
apt-get update
apt-get dist-upgrade -y 
apt-get install wget build-essential unzip git -y 
rm -rf /var/lib/apt/lists/*
mkdir -p /usr/local/src
cd /usr/local/src && \
wget -c https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 && \
tar xf minimap2-2.17_x64-linux.tar.bz2 && \
rm minimap2-2.17_x64-linux.tar.bz2

%labels
MAINTAINER BioBox
Version v1.0

Collection


View on Datalad

Metrics

key value
id /containers/biobox-info-Minimap2-latest
collection name biobox-info/Minimap2
branch v2.17
tag latest
commit 1a28ba11d842cbd94a7c1e3f2e10716b952922d6
version (container hash) fc9eac006eabdbef684aa4608b89883a36873f6d99be909f432d65d3241e24f9
build date 2019-10-21T07:13:23.235Z
size (MB) 106.24609375
size (bytes) 111407104
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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