biobox-info/BBMap:latest

$ singularity pull shub://biobox-info/BBMap:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:18.04

%environment
PATH=/usr/local/src/bbmap:$PATH
export LC_ALL=C.UTF-8
export LANG=C.UTF-8

%post
sed -i "s/archive.ubuntu/de.archive.ubuntu/" /etc/apt/sources.list && \
sed -i "s/security.ubuntu/de.security.ubuntu/" /etc/apt/sources.list && \
apt-get update
apt-get dist-upgrade -y 
apt-get install wget python python3 build-essential unzip git -y 
rm -rf /var/lib/apt/lists/*
mkdir -p /usr/local/src
cd /usr/local/src && \
wget -c https://netix.dl.sourceforge.net/project/bbmap/BBMap_38.67.tar.gz -O bbmap_38.67.tar.gz && \
tar xf bbmap_38.67.tar.gz && \
rm bbmap_38.67.tar.gz

%labels
MAINTAINER BioBox
Version v1.0

Collection

• Name: biobox-info/BBMap
• License: None

Metrics

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