bhattlab/bhattlab_workflows:plotting

$ singularity pull shub://bhattlab/bhattlab_workflows:plotting

Singularity Recipe

# Singularity environment definition for plotting in R
# Eli Moss
# elimoss@stanford.edu

bootstrap: docker
from: ubuntu:19.04

# this command assumes at least singularity 2.3
%environment
    PATH="/usr/local/anaconda/bin:$PATH"
%post
    apt-get update
		apt-get install -y wget bzip2 \
      ca-certificates
    apt-get clean

    # install anaconda
    if [ ! -d /usr/local/anaconda ]; then
         wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
            -O ~/anaconda.sh && \
         bash ~/anaconda.sh -b -p /usr/local/anaconda && \
         rm ~/anaconda.sh
    fi
		export PATH="/usr/local/anaconda/bin:$PATH"

		conda config --set remote_read_timeout_secs 600


		#install plotting stuff

		 conda install -y -c conda-forge -c bioconda -c r \
       r r-ggplot2 r-reshape2 r-rcolorbrewer \
			 readline=6.2



			 #add more stuff here if needed for plotting stuff with this container

Collection


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Metrics

key value
id /containers/bhattlab-bhattlab_workflows-plotting
collection name bhattlab/bhattlab_workflows
branch singularity
tag plotting
commit f444516e8a44d456b95313bb1dc95ee23510bbc4
version (container hash) 60baa094086622695b3ac47d0f1814f3
build date 2021-04-14T03:38:36.691Z
size (MB) 1202
size (bytes) 535547935
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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