bhattlab/bhattlab_workflows:plotting
$ singularity pull shub://bhattlab/bhattlab_workflows:plotting
Singularity Recipe
# Singularity environment definition for plotting in R
# Eli Moss
# elimoss@stanford.edu
bootstrap: docker
from: ubuntu:19.04
# this command assumes at least singularity 2.3
%environment
PATH="/usr/local/anaconda/bin:$PATH"
%post
apt-get update
apt-get install -y wget bzip2 \
ca-certificates
apt-get clean
# install anaconda
if [ ! -d /usr/local/anaconda ]; then
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
-O ~/anaconda.sh && \
bash ~/anaconda.sh -b -p /usr/local/anaconda && \
rm ~/anaconda.sh
fi
export PATH="/usr/local/anaconda/bin:$PATH"
conda config --set remote_read_timeout_secs 600
#install plotting stuff
conda install -y -c conda-forge -c bioconda -c r \
r r-ggplot2 r-reshape2 r-rcolorbrewer \
readline=6.2
#add more stuff here if needed for plotting stuff with this container
Collection
- Name: bhattlab/bhattlab_workflows
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bhattlab-bhattlab_workflows-plotting |
collection name | bhattlab/bhattlab_workflows |
branch | singularity |
tag | plotting |
commit | f444516e8a44d456b95313bb1dc95ee23510bbc4 |
version (container hash) | 60baa094086622695b3ac47d0f1814f3 |
build date | 2021-04-14T03:38:36.691Z |
size (MB) | 1202 |
size (bytes) | 535547935 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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