bhattlab/MGEfinder-singularity:latest

$ singularity pull shub://bhattlab/MGEfinder-singularity:latest

Singularity Recipe

Bootstrap: docker

From: continuumio/miniconda3

%environment
    PATH=/opt/conda/envs/mgefinder/bin:$PATH
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8

%post
    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc
    echo "source activate mgefinder" > ~/.bashrc
    git clone https://github.com/bhattlab/MGEfinder.git
    /opt/conda/bin/conda env create -f MGEfinder/env/conda_linux64.yaml
    rm -rf MGEfinder

%runscript
    exec "$@"

Collection


View on Datalad

Metrics

key value
id /containers/bhattlab-MGEfinder-singularity-latest
collection name bhattlab/MGEfinder-singularity
branch master
tag latest
commit 23db425042b7596e50c456e2a723f276e98240e4
version (container hash) 15acba2052e6026ca50c80fff989d97e
build date 2021-02-05T10:17:31.756Z
size (MB) 2948.0
size (bytes) 1160269855
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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