bballew/NGS_singularity_recipes:svaba

$ singularity pull shub://bballew/NGS_singularity_recipes:svaba

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch

%environment
    PATH=/svaba/bin:$PATH
    export PATH

%post
    yum -y groupinstall "Development Tools"
    yum -y install sudo autoconf automake make cmake gcc wget perl-Data-Dumper zlib zlib-devel tar bzip2 bzip2-devel xz-devel curl-devel openssl-devel ncurses-devel

    git clone --recursive https://github.com/walaj/svaba
    cd svaba
    ./configure
    make
    make install

    yum clean all

Collection


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Metrics

key value
id /containers/bballew-NGS_singularity_recipes-svaba
collection name bballew/NGS_singularity_recipes
branch master
tag svaba
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) f3ae1487882eda114fe9726af6ffb44e
build date 2021-02-26T19:25:10.900Z
size (MB) 1088
size (bytes) 348872735
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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