bballew/NGS_singularity_recipes:samtools_1-9

$ singularity pull shub://bballew/NGS_singularity_recipes:samtools_1-9

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew
    
%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch
    mkdir -p ${SINGULARITY_ROOTFS}/exec
    
%post
    yum -y groupinstall "Development Tools"
    yum -y install autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel ncurses-devel

    wget https://github.com/samtools/samtools/releases/download/1.9/samtools-1.9.tar.bz2
    tar xvjf samtools-1.9.tar.bz2
    cd samtools-1.9
    ./configure
    make
    make install

    yum clean all

Collection


View on Datalad

Metrics

key value
id /containers/bballew-NGS_singularity_recipes-samtools_1-9
collection name bballew/NGS_singularity_recipes
branch master
tag samtools_1-9
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) 5df4bfb0c08aeeca05e1c2d6ca7cbfae
build date 2021-03-01T17:54:45.693Z
size (MB) 864
size (bytes) 273350687
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.