bballew/NGS_singularity_recipes:picard_2-18-15

$ singularity pull shub://bballew/NGS_singularity_recipes:picard_2-18-15

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch
    
%post
    yum -y groupinstall "Development Tools"
    yum -y install sudo autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel ncurses-devel

    # install java

    yum -y install java-1.8.0-openjdk-devel

    # install picard

    wget https://github.com/broadinstitute/picard/releases/download/2.18.15/picard.jar
    mv picard.jar /bin
    
    yum clean all

Collection


View on Datalad

Metrics

key value
id /containers/bballew-NGS_singularity_recipes-picard_2-18-15
collection name bballew/NGS_singularity_recipes
branch master
tag picard_2-18-15
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) 4b6fc9dc7189352ca0578d855ca15733
build date 2021-03-04T18:06:30.289Z
size (MB) 1046
size (bytes) 350425119
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.