bballew/NGS_singularity_recipes:manta_1-4-0
$ singularity pull shub://bballew/NGS_singularity_recipes:manta_1-4-0
Singularity Recipe
BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%labels
AUTHOR BBallew
%setup
mkdir -p ${SINGULARITY_ROOTFS}/input
mkdir -p ${SINGULARITY_ROOTFS}/output
mkdir -p ${SINGULARITY_ROOTFS}/ref
mkdir -p ${SINGULARITY_ROOTFS}/scratch
%environment
export PATH="/manta-1.4.0.centos6_x86_64/bin:$PATH"
%post
yum -y groupinstall "Development Tools"
yum -y install wget tar bzip2 bzip2-devel
#### install manta
wget https://github.com/Illumina/manta/releases/download/v1.4.0/manta-1.4.0.centos6_x86_64.tar.bz2
tar xvjf manta-1.4.0.centos6_x86_64.tar.bz2
yum clean all
Collection
- Name: bballew/NGS_singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bballew-NGS_singularity_recipes-manta_1-4-0 |
collection name | bballew/NGS_singularity_recipes |
branch | master |
tag | manta_1-4-0 |
commit | 261b0ba21401aa85360fa54efa5ba7f093fdc71a |
version (container hash) | dc91903d1f63c512adc912d1cd77cbf5 |
build date | 2021-02-26T19:25:29.048Z |
size (MB) | 1134 |
size (bytes) | 289968159 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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