bballew/NGS_singularity_recipes:manta_1-4-0

$ singularity pull shub://bballew/NGS_singularity_recipes:manta_1-4-0

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup

    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch

%environment
    export PATH="/manta-1.4.0.centos6_x86_64/bin:$PATH"

%post
    yum -y groupinstall "Development Tools"
    yum -y install wget tar bzip2 bzip2-devel

    #### install manta

    wget https://github.com/Illumina/manta/releases/download/v1.4.0/manta-1.4.0.centos6_x86_64.tar.bz2
    tar xvjf manta-1.4.0.centos6_x86_64.tar.bz2

    yum clean all

Collection


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key value
id /containers/bballew-NGS_singularity_recipes-manta_1-4-0
collection name bballew/NGS_singularity_recipes
branch master
tag manta_1-4-0
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) dc91903d1f63c512adc912d1cd77cbf5
build date 2021-02-26T19:25:29.048Z
size (MB) 1134
size (bytes) 289968159
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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