bballew/NGS_singularity_recipes:bwa_0-7-17

$ singularity pull shub://bballew/NGS_singularity_recipes:bwa_0-7-17

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch
    mkdir -p ${SINGULARITY_ROOTFS}/exec
    
%post
    yum -y groupinstall "Development Tools"
    yum -y install sudo autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel ncurses-devel


    # install bwa

    wget https://github.com/lh3/bwa/releases/download/v0.7.17/bwa-0.7.17.tar.bz2
    tar xvjf bwa-0.7.17.tar.bz2
    cd bwa-0.7.17/
    make
    cp bwa /usr/local/bin

    yum clean all

Collection


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Metrics

key value
id /containers/bballew-NGS_singularity_recipes-bwa_0-7-17
collection name bballew/NGS_singularity_recipes
branch master
tag bwa_0-7-17
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) 8fee55b9da09bee2976d3a78a04e1735
build date 2020-08-26T20:39:41.692Z
size (MB) 802
size (bytes) 254275615
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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