bballew/NGS_singularity_recipes:bedtools_2-27-1
$ singularity pull shub://bballew/NGS_singularity_recipes:bedtools_2-27-1
Singularity Recipe
BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
%labels
AUTHOR BBallew
%setup
mkdir -p ${SINGULARITY_ROOTFS}/input
mkdir -p ${SINGULARITY_ROOTFS}/output
mkdir -p ${SINGULARITY_ROOTFS}/ref
mkdir -p ${SINGULARITY_ROOTFS}/scratch
mkdir -p ${SINGULARITY_ROOTFS}/exec
%post
yum -y groupinstall "Development Tools"
yum -y install autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel
# yum install BEDTools
wget https://github.com/arq5x/bedtools2/releases/download/v2.27.1/bedtools-2.27.1.tar.gz
tar -zxvf bedtools-2.27.1.tar.gz
cd bedtools2
make
cp ./bin/* /usr/local/bin/
Collection
- Name: bballew/NGS_singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/bballew-NGS_singularity_recipes-bedtools_2-27-1 |
collection name | bballew/NGS_singularity_recipes |
branch | master |
tag | bedtools_2-27-1 |
commit | 261b0ba21401aa85360fa54efa5ba7f093fdc71a |
version (container hash) | 2a3a2f78097d271c9e5cf5ccb4991913 |
build date | 2021-02-26T19:25:34.232Z |
size (MB) | 1012 |
size (bytes) | 339525663 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.