bballew/NGS_singularity_recipes:bedtools_2-27-1

$ singularity pull shub://bballew/NGS_singularity_recipes:bedtools_2-27-1

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch
    mkdir -p ${SINGULARITY_ROOTFS}/exec

%post
    yum -y groupinstall "Development Tools"
    yum -y install autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel

#    yum install BEDTools

    wget https://github.com/arq5x/bedtools2/releases/download/v2.27.1/bedtools-2.27.1.tar.gz
    tar -zxvf bedtools-2.27.1.tar.gz
    cd bedtools2
    make
    cp ./bin/* /usr/local/bin/

Collection


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Metrics

key value
id /containers/bballew-NGS_singularity_recipes-bedtools_2-27-1
collection name bballew/NGS_singularity_recipes
branch master
tag bedtools_2-27-1
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) 2a3a2f78097d271c9e5cf5ccb4991913
build date 2021-02-26T19:25:34.232Z
size (MB) 1012
size (bytes) 339525663
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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