bballew/NGS_singularity_recipes:bcftools_1-9

$ singularity pull shub://bballew/NGS_singularity_recipes:bcftools_1-9

Singularity Recipe

BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%labels
    AUTHOR BBallew

%setup
    mkdir -p ${SINGULARITY_ROOTFS}/input
    mkdir -p ${SINGULARITY_ROOTFS}/output
    mkdir -p ${SINGULARITY_ROOTFS}/ref
    mkdir -p ${SINGULARITY_ROOTFS}/scratch
    mkdir -p ${SINGULARITY_ROOTFS}/exec

%post
    yum -y groupinstall "Development Tools"
    yum -y install autoconf automake make gcc wget perl-Data-Dumper zlib-devel bzip2 bzip2-devel xz-devel curl-devel openssl-devel

    wget https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2
    tar xvjf bcftools-1.9.tar.bz2
    cd bcftools-1.9
    ./configure
    make
    make install

Collection


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key value
id /containers/bballew-NGS_singularity_recipes-bcftools_1-9
collection name bballew/NGS_singularity_recipes
branch master
tag bcftools_1-9
commit 261b0ba21401aa85360fa54efa5ba7f093fdc71a
version (container hash) 43001681fa923ad3f4c79a10c460c55b
build date 2021-02-26T19:25:23.222Z
size (MB) 986
size (bytes) 312713247
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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