bailsofhay/gears-singularity:general

$ singularity pull shub://bailsofhay/gears-singularity:general

Singularity Recipe

BootStrap: debootstrap 
OSVersion: xenial 
MirrorURL: http://archive.ubuntu.com/ubuntu/ 
Include: bash

# First working attempt.  Build with:
%post
  locale-gen en_US.UTF-8
  sed -i 's/main/main restricted universe/g' /etc/apt/sources.list
  echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" | tee -a /etc/apt/sources.list
  gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
  gpg -a --export E084DAB9 | apt-key add -
  apt-get update
 
 # Install R, openmpi, misc. utilities:
  apt-get install -y libopenblas-dev r-base-core r-base-dev libcurl4-openssl-dev libopenmpi-dev openmpi-bin openmpi-common openmpi-doc openssh-client openssh-server libssh-dev wget vim git nano git cmake gfortran g++ curl wget python autoconf bzip2 libtool libtool-bin libxml2-dev

  # GDAL et al.: 
  apt-get install -y libgdal-dev libproj-dev 

  #GRASS GIS:
  apt-get install -y software-properties-common python-software-properties
  add-apt-repository ppa:ubuntugis/ppa
  apt-get update
  apt-get install -y grass libgdal-dev libproj-dev gdal-bin python-gdal python3-gdal
  
  # Miscellaneous other installs
  apt-get install -y libudunits2-dev
  
  apt-get clean
  
  # Install required R packages
  R --slave -e 'install.packages(c("doMPI","XML","raster","rgdal","rgeos","RStoolbox","devtools","sf"), repos="https://cloud.r-project.org/")'
  
  # Install latest GDALUtils:
  R --slave -e 'install.packages(c("gdalUtils"), repos="http://R-Forge.R-project.org")'
  R --slave -e 'install.packages(c("spatial.tools"), repos="http://R-Forge.R-project.org")'

Collection

• Name: bailsofhay/gears-singularity
• License: None

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