bahlolab/nf-wgs-multiqc:v0.2

$ singularity pull shub://bahlolab/nf-wgs-multiqc:v0.2

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda config --add channels r
    conda install -y \
        gatk4=4.0.10.0 \
        samtools=1.9 \
        multiqc=1.6 \
        fastp=0.19.4 \
        bwa=0.7.17
    conda clean --all -y
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


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Metrics

key value
id /containers/bahlolab-nf-wgs-multiqc-v0.2
collection name bahlolab/nf-wgs-multiqc
branch master
tag v0.2
commit 3b470b01befd53ae275737734f17ea1edb79c94f
version (container hash) 81a327205f726c1581f58575437f0237
build date 2018-10-11T09:24:02.674Z
size (MB) 2686
size (bytes) 1035816991
SIF Download URL (please use pull with shub://)
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