bahlolab/nf-wgs-multiqc:v0.1

$ singularity pull shub://bahlolab/nf-wgs-multiqc:v0.1

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda config --add channels r
    conda install -y \
        gatk4=4.0.10.0 \
        samtools=1.9 \
        bcftools=1.9 \
        multiqc=1.6 \
        fastp=0.19.4
    conda clean --all -y
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


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Metrics

key value
id /containers/bahlolab-nf-wgs-multiqc-v0.1
collection name bahlolab/nf-wgs-multiqc
branch master
tag v0.1
commit df3871590d45edc35ced12cf4bd0394424ac4cc8
version (container hash) 2a8fae66d98f76485a38ac5874558327
build date 2018-10-10T10:52:37.748Z
size (MB) 2595
size (bytes) 1014231071
SIF Download URL (please use pull with shub://)
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