bahlolab/nf-wgs-multiqc:v0.0

$ singularity pull shub://bahlolab/nf-wgs-multiqc:v0.0

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda config --add channels r
    conda install -y \
        gatk4=4.0.10.0 \
        samtools=1.9 \
        bcftools=1.9 \
        multiqc=1.6 \
        fastqc=0.11.8
    conda clean --all -y
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


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Metrics

key value
id /containers/bahlolab-nf-wgs-multiqc-v0.0
collection name bahlolab/nf-wgs-multiqc
branch master
tag v0.0
commit 84655976c66fc68713c954baddaa7b663c39b6ac
version (container hash) 0dfa0c357d9b3c8b7a49c36fe5053322
build date 2018-10-10T10:52:37.754Z
size (MB) 2693
size (bytes) 1044492319
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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