bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.4

$ singularity pull shub://bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.4

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda install -y \
       genomicconsensus=2.3.2 \
       pbmm2=0.12.0 \
       blasr=5.3.2 \
       lima=1.8.0 \
       pbccs=3.3.0 \
       pblaa=2.4.2 \
       pbsv=2.1.1
    conda clean --tarballs --index-cache --source-cache
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


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Metrics

key value
id /containers/bahlolab-nf-pacbio-amplicon-analysis-pacbio_smrt_v0.4
collection name bahlolab/nf-pacbio-amplicon-analysis
branch master
tag pacbio_smrt_v0.4
commit d5490960e30212c3292e4583b6a4d0aad5de4b48
version (container hash) 9dba58f9fb2f954cd8612996e16e7596
build date 2019-01-24T13:54:58.840Z
size (MB) 1563
size (bytes) 545972255
SIF Download URL (please use pull with shub://)
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