bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.2

$ singularity pull shub://bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.2

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda install -y \
       genomicconsensus=2.3.2 \
       pbmm2=0.10.1 \
       blasr=5.3.2 \
       lima=1.8.0 \
       pbccs=3.1.0 \
       pblaa=2.4.2 \
       pbsv=2.0.1
    conda clean --tarballs --index-cache --source-cache
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


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Metrics

key value
id /containers/bahlolab-nf-pacbio-amplicon-analysis-pacbio_smrt_v0.2
collection name bahlolab/nf-pacbio-amplicon-analysis
branch master
tag pacbio_smrt_v0.2
commit 6d85d8ba681f98bb7b532bc448e169bc6a1b9a61
version (container hash) 4082e5537b741ab0408135de43803760
build date 2019-01-08T15:14:12.075Z
size (MB) 1725
size (bytes) 601894943
SIF Download URL (please use pull with shub://)
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