bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.1

$ singularity pull shub://bahlolab/nf-pacbio-amplicon-analysis:pacbio_smrt_v0.1

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda install -y \
       genomicconsensus=2.3.2 \
       pbmm2=0.8.1 \
       blasr=5.3.2 \
       lima=1.7.1 \
       pbccs=3.1.0 \
       pblaa=2.4.2 \
       pbsv=2.0.1
    conda clean --tarballs --index-cache --source-cache
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

Collection


View on Datalad

Metrics

key value
id /containers/bahlolab-nf-pacbio-amplicon-analysis-pacbio_smrt_v0.1
collection name bahlolab/nf-pacbio-amplicon-analysis
branch master
tag pacbio_smrt_v0.1
commit 6d85d8ba681f98bb7b532bc448e169bc6a1b9a61
version (container hash) 16e2431e6514bb07b62953a881fe0153
build date 2019-01-08T15:14:12.080Z
size (MB) 1707
size (bytes) 596238367
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.