bahlolab/nf-pacbio-amplicon-analysis:gatk4_v0.1

$ singularity pull shub://bahlolab/nf-pacbio-amplicon-analysis:gatk4_v0.1

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda install -y gatk4=4.1.0.0
    conda clean --all -y
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
    export GATK_LOCAL_JAR=/opt/conda/share/gatk4-4.1.0.0-0/gatk-package-4.1.0.0-local.jar

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key value
id /containers/bahlolab-nf-pacbio-amplicon-analysis-gatk4_v0.1
collection name bahlolab/nf-pacbio-amplicon-analysis
branch master
tag gatk4_v0.1
commit 967b673a42875b5a78d32a8f24f24485a55c667b
version (container hash) 3d3bfc536760b37b17802b913b414dee
build date 2019-02-06T08:23:48.111Z
size (MB) 936
size (bytes) 534425631
SIF Download URL (please use pull with shub://)
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