bahlolab/nf-pacbio-amplicon-analysis:amplicon_phasing_utils_v0.2

$ singularity pull shub://bahlolab/nf-pacbio-amplicon-analysis:amplicon_phasing_utils_v0.2

Singularity Recipe

Bootstrap:docker
From: continuumio/miniconda3:latest

%labels
  AUTHOR Jacob Munro
  AUTHOR bahlolab

%post
    alias conda="/opt/conda/bin/conda"
    conda config --add channels conda-forge
    conda config --add channels bioconda
    conda install -y \
       pysam=0.15.2 \
       samtools=1.9 \
       bcftools=1.9 \
       ensembl-vep=95.0 \
       whatshap=0.17
    conda clean --all -y
    apt-get update && apt-get install -y procps

%environment
    export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"

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key value
id /containers/bahlolab-nf-pacbio-amplicon-analysis-amplicon_phasing_utils_v0.2
collection name bahlolab/nf-pacbio-amplicon-analysis
branch master
tag amplicon_phasing_utils_v0.2
commit 93c6890c48147f71f962ff68743c200de45bbef6
version (container hash) b9cf6edf6114dfb415fce768022afb66
build date 2019-01-18T10:30:21.636Z
size (MB) 1372
size (bytes) 420515871
SIF Download URL (please use pull with shub://)
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