arzwa/wgd:latest
$ singularity pull shub://arzwa/wgd:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu
%runscript
wgd --help
%help
wgd --help
%labels
AUTHOR arzwa@psb.vib-ugent.be
%environment
# click was complaining about this
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
%post
# install python, git, etc.
apt-get update && DEBIAN_FRONTEND=noninteractive apt-get -yq install python3-pip python3-tk git wget \
build-essential mcl ncbi-blast+ muscle mafft prank fasttree phyml paml
# set an alias for fasttree
ln -s /usr/bin/fasttree /usr/bin/FastTree
# get wgd
git clone https://github.com/arzwa/wgd.git
cd wgd
# install wgd
pip3 install .
Collection
- Name: arzwa/wgd
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/arzwa-wgd-latest |
collection name | arzwa/wgd |
branch | master |
tag | latest |
commit | 6154c88c7b4cc1effe34f3a30c6bd707e0da4620 |
version (container hash) | 2982aea32b0cb0326563a709f2d3c94b |
build date | 2021-04-07T13:18:11.140Z |
size (MB) | 1177 |
size (bytes) | 503529503 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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