arzwa/wgd:latest

$ singularity pull shub://arzwa/wgd:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu

%runscript
	wgd --help

%help
	wgd --help

%labels
	AUTHOR arzwa@psb.vib-ugent.be

%environment
	# click was complaining about this
	export LC_ALL=C.UTF-8
	export LANG=C.UTF-8

%post
	# install python, git, etc.
	apt-get update && DEBIAN_FRONTEND=noninteractive apt-get -yq install python3-pip python3-tk git wget \
	    build-essential mcl ncbi-blast+ muscle mafft prank fasttree phyml paml

	# set an alias for fasttree
	ln -s /usr/bin/fasttree /usr/bin/FastTree

	# get wgd
	git clone https://github.com/arzwa/wgd.git
	cd wgd

	# install wgd
	pip3 install .

Collection


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Metrics

key value
id /containers/arzwa-wgd-latest
collection name arzwa/wgd
branch master
tag latest
commit 6154c88c7b4cc1effe34f3a30c6bd707e0da4620
version (container hash) 2982aea32b0cb0326563a709f2d3c94b
build date 2021-04-07T13:18:11.140Z
size (MB) 1177
size (bytes) 503529503
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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