arccontainers/recipes:r_sf

$ singularity pull shub://arccontainers/recipes:r_sf

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%post

apt-get -y update && apt-get install -y apt-utils

apt-get install -y build-essential

apt-get install -y gfortran
apt-get install -y libopenblas-base
apt-get install -y wget
apt-get install -y ed
apt-get install -y nano
apt-get install -y git-all
apt-get install -y software-properties-common #required for apt-add-repository
apt-get -y update


#Set correct locale for R
apt-get -y update && apt-get install -y locales
locale-gen en_GB.UTF-8
export LANG=en_GB.UTF-8
export LANGUAGE=en_GB.UTF-8
export LC_ALL=en_GB.UTF-8


#Add required libraries for R sf package.
#See vignette: https://cran.r-project.org/web/packages/sf/sf.pdf
#and recommended repo for dependencies- see https://github.com/r-spatial/sf
#sf had problems building against standard repo of these libs

add-apt-repository ppa:ubuntugis/ubuntugis-unstable
apt-get -y update
apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev

# Install R
echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" | tee -a /etc/apt/sources.list
gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
gpg -a --export E084DAB9 | apt-key add -
apt-get -y update
apt-get -y install r-base r-base-dev

#Install R packages
Rscript -e "install.packages('parallel')"
Rscript -e "install.packages('sp')"
Rscript -e "install.packages('rgeos')"
Rscript -e "install.packages('rgdal')"
Rscript -e "install.packages('raster')"
Rscript -e "install.packages('tidyverse')"
Rscript -e "install.packages('dplyr')"
Rscript -e "install.packages('tidyr')"
Rscript -e "install.packages('tibble')"
Rscript -e "install.packages('readr')"
Rscript -e "install.packages('forcats')"
Rscript -e "install.packages('stringr')"
Rscript -e "install.packages('purrr')"             
Rscript -e "install.packages('ggplot2')"
Rscript -e "install.packages('sf')"

#Set stub /nobackup directory for Singularity

mkdir -p /nobackup

Collection

• Name: arccontainers/recipes
• License: None

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