anibalsolon/freesurfer-5.3.0-container:latest
$ singularity pull shub://anibalsolon/freesurfer-5.3.0-container:latest
Singularity Recipe
Bootstrap: shub
From: pndni/centos7-base:1.4.0
#OSVersion: 7
#MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/x86_64/
#Include: yum
%post
##############
# freesurfer #
##############
wget --no-verbose --output-document=/root/freesurfer.tar.gz https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz
tar -C /opt -xzvf /root/freesurfer.tar.gz
rm /root/freesurfer.tar.gz
mkdir /mnt/input
mkdir /mnt/output
mkdir /mnt/work_dir
%environment
export NO_FSFAST=1
export FREESURFER_HOME=/opt/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.sh
%help
Using freesurfer requires a freesurfer license file.
A license file may be obtained from
https://surfer.nmr.mgh.harvard.edu/registration.html
Ensure that the license file is visible from the container,
and set the environment variable FS_LICENSE to point to it
(or copy the file to /opt/freesurfer/license.txt from
inside the container)
%labels
Maintainer Steven Tilley
Version 1.0.0
FreeSurfer_License https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense
FreeSurfer_URL https://surfer.nmr.mgh.harvard.edu/
FreeSurfer_Version 5.3.0
Collection
View on Datalad
Metrics
key | value |
---|---|
id | /containers/anibalsolon-freesurfer-5.3.0-container-latest |
collection name | anibalsolon/freesurfer-5.3.0-container |
branch | master |
tag | latest |
commit | 1eb0ca38480cabf30a2fdf2c0c1c4105e408bd9a |
version (container hash) | a97ce2cb24f0c31140836698ad758ad1 |
build date | 2019-12-11T21:17:48.167Z |
size (MB) | 9020.0 |
size (bytes) | 4347408415 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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