ambenj/bin_das_tool:dastool

$ singularity pull shub://ambenj/bin_das_tool:dastool

Singularity Recipe

BootStrap: docker
From: ubuntu:16.04


# this command assumes at least singularity 2.3
%environment
    PATH="/usr/local/anaconda/bin:$PATH"

%post
    apt-get update
    apt-get install -y locales
    # localle update necessary for quast
    locale-gen --purge "en_US.UTF-8"
    update-locale LANG="en_US.UTF-8"

    apt-get install -y wget curl less
    apt-get install -y build-essential


    # install anaconda
    if [ ! -d /usr/local/anaconda ]; then
         wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \
            -O /anaconda.sh && \
         bash /anaconda.sh -b -p /usr/local/anaconda && \
         rm /anaconda.sh
    fi
        export PATH="/usr/local/anaconda/bin:$PATH"

    conda config --add channels defaults
    conda config --add channels bioconda
    conda config --add channels conda-forge

    # requirements for das_tool workflow
    conda install -c bioconda das_tool
    sed -i "s#/bin/env#/usr/bin/env#g" /usr/local/anaconda/bin/Fasta_to_Scaffolds2Bin.sh

    conda install -c bioconda -c conda-forge snakemake
    conda install -c r r-data.table

%runscript
   exec /bin/bash

Collection


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Metrics

key value
id /containers/ambenj-bin_das_tool-dastool
collection name ambenj/bin_das_tool
branch master
tag dastool
commit 75dad1fb422ff021f896d2a9391a920c8923135f
version (container hash) 02413fc64f488cc7b999742e8762a9a4
build date 2019-09-03T13:58:28.495Z
size (MB) 3084
size (bytes) 1350897695
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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