amarallab/rgraph_singularity:latest
$ singularity pull shub://amarallab/rgraph_singularity:latest
Singularity Recipe
bootstrap: docker
From: ubuntu:18.10
%labels
MAINTAINER amaral lab
%post
apt-get update
apt-get upgrade -y
apt-get install -y git build-essential autoconf libtool libgsl0-dev gsl-bin
cd /
rm -rf /rgraph
git clone https://github.com/seeslab/rgraph.git
cd /rgraph
./autogen.sh
./configure
make
apt-get remove -y --purge git build-essential autoconf libtool libgsl0-dev
apt-get autoremove -y
cp /rgraph/netcarto/netcarto /usr/bin
cp /rgraph/netcarto/netcarto-legacy /usr/bin
cp /rgraph/only_deg/only_degeneration_mb /usr/bin
cp /rgraph/only_deg/only_degeneration_mb_gibbs /usr/bin
cp /rgraph/recommender/multi_recommend_2 /usr/bin
cp /rgraph/recommender/multi_recommend_k /usr/bin
cp /rgraph/recommender/multi_recommend_k_gibbs /usr/bin
cp /rgraph/reliability/reliability_links /usr/bin
cp /rgraph/reliability/reliability_links_gibbs /usr/bin
cp /rgraph/reliability/reliability_links_gibbs_sparse /usr/bin
cp /rgraph/reliability/reliability_links_k /usr/bin
cp /rgraph/reliability/reliability_reconstruct /usr/bin
cp /rgraph/test-driver /usr/bin
cp /rgraph/utils/bipartitemodularity /usr/bin
cp /rgraph/utils/bipartitemodularity_w /usr/bin
cp /rgraph/utils/countlinks /usr/bin
cp /rgraph/utils/getgiant /usr/bin
cp /rgraph/utils/lapspec /usr/bin
cp /rgraph/utils/modularbipart /usr/bin
cp /rgraph/utils/multinetlayout /usr/bin
cp /rgraph/utils/mutualinfo /usr/bin
cp /rgraph/utils/netcompare /usr/bin
cp /rgraph/utils/netlayout /usr/bin
cp /rgraph/utils/netprop /usr/bin
cp /rgraph/utils/netrandomize /usr/bin
cp /rgraph/utils/nodeprop /usr/bin
rm -rf /rgraph
%runscript
exec /usr/bin/netcarto "$@"
Collection
- Name: amarallab/rgraph_singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/amarallab-rgraph_singularity-latest |
collection name | amarallab/rgraph_singularity |
branch | master |
tag | latest |
commit | 3248f708ef7d78c17404af0ef55f59adbeedbf1c |
version (container hash) | bb89eedb85e582687b4e63a281fc5e26 |
build date | 2019-08-21T19:35:08.899Z |
size (MB) | 125.0 |
size (bytes) | 54624287 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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