alikerr/INLA-RImage:latest
$ singularity pull shub://alikerr/INLA-RImage:latest
Singularity Recipe
Bootstrap: docker
From: rocker/r-ver:latest
%post
apt-get update
apt-get install -y libssl-dev libsasl2-dev jags wget
apt-get install -y curl httpie libudunits2-dev
#apt-get install -y gdal-bin gdal-data libgdal-dev libgdal-grass libgdal-java
R -e "install.packages('ggplot')"
R -e "install.packages('jsonlite')"
R -e "install.packages('dplyr')"
R -e "install.packages('ggplot2')"
R -e "install.packages('igraph')"
R -e "install.packages('Matrix')"
R -e "install.packages('shiny')"
R -e "install.packages('rjags')"
R -e "install.packages('dclone')"
R -e "install.packages('sp')"
R -e "install.packages('lme4')"
R -e "install.packages('MASS')"
R -e "install.packages('psych')"
# echo "DONE with dependencies?"
# sleep 10
R -e 'install.packages("INLA", repos="https://inla.r-inla-download.org/R/stable")'
R -e 'update.packages("INLA", dep=TRUE)'
R -e 'download.file("https://i-pri.org/special/Biostatistics/Software/gINLAnd/gINLAnd_0.0.0.tar.gz", "gINLAnd")'
R -e 'install.packages("gINLAnd", repos = NULL, type = "source")'
mkdir /global
mkdir /global/scratch
mkdir /scratch
mkdir /project
%run
R --version
Collection
- Name: alikerr/INLA-RImage
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/alikerr-INLA-RImage-latest |
collection name | alikerr/INLA-RImage |
branch | master |
tag | latest |
commit | ddfd15bbe64b6443bcc4f6f78db6501d30a0dc43 |
version (container hash) | abe5498602344776f7429878c0264dfb |
build date | 2020-01-17T16:12:02.923Z |
size (MB) | 1660 |
size (bytes) | 528609311 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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