albatrosfm/Singularity:latest
$ singularity pull shub://albatrosfm/Singularity:latest
Singularity Recipe
BootStrap: docker
From: nvidia/cuda:8.0-cudnn6-runtime-ubuntu16.04
################################################################################
%labels
################################################################################
MAINTAINER Wolfgang Resch
VERSION v3
################################################################################
%environment
################################################################################
export PATH=/usr/local/sbin:/usr/sbin:/sbin:/bin:/usr/bin:/usr/local/bin:/usr/local/cuda/bin:
export PYTHONPATH=/usr/share/pdb2pqr:
################################################################################
%post
################################################################################
###
### install keras + tensorflow + other useful packages
###
apt-get update
apt-get install -y wget libhdf5-dev graphviz locales python3-dev python3-pip git python-pandas
locale-gen en_US.UTF-8
apt-get clean
pip3 install --upgrade pip
pip3 install tensorflow-gpu==1.4.0
pip3 install keras==2.0.8
pip3 install setuptools wheel Pillow scikit-learn matplotlib ipython==5.5.0
pip3 install h5py
pip3 install --upgrade notebook
pip3 install cython
pip3 install Biopython
pip3 install six
###
### destination for NIH HPC bind mounts
###
mkdir /gpfs /spin1 /gs2 /gs3 /gs4 /gs5 /gs6 /gs7 /gs8 /data /scratch /fdb /lscratch /pdb
Collection
- Name: albatrosfm/Singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/albatrosfm-Singularity-latest |
collection name | albatrosfm/Singularity |
branch | master |
tag | latest |
commit | 79086a20ece88082319b4c3d57933cb45e832f5f |
version (container hash) | 37a2ad77248ba3e65efcba25ab02cd17 |
build date | 2017-11-16T10:30:37.588Z |
size (MB) | 3117 |
size (bytes) | 1529036831 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.