albafsanles/cellcount_epic:latest

$ singularity pull shub://albafsanles/cellcount_epic:latest

Singularity Recipe

Bootstrap: docker
From: ubuntu:latest


%post

apt-get update && apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev ghostscript 
apt-get update && apt-get -y install r-base
apt-get update && apt-get install -y libxt-dev 

Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'   
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k","FlowSorted.Blood.EPIC","IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICmanifest"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'

Collection


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Metrics

key value
id /containers/albafsanles-cellcount_epic-latest
collection name albafsanles/cellcount_epic
branch master
tag latest
commit 2ccaf90c1ebffcdf65b5069421769d9c0d02794e
version (container hash) ea859d14b43329d6ae21c1a88a161094
build date 2019-05-18T10:56:40.595Z
size (MB) 1857
size (bytes) 686436383
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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