albafsanles/cellcount_epic:latest
$ singularity pull shub://albafsanles/cellcount_epic:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:latest
%post
apt-get update && apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev ghostscript
apt-get update && apt-get -y install r-base
apt-get update && apt-get install -y libxt-dev
Rscript -e 'install.packages("devtools", dependencies = TRUE)'
Rscript -e 'library(devtools); install_github("brentp/celltypes450")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite("sva")'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("minfi","FlowSorted.Blood.450k","FlowSorted.Blood.EPIC","IlluminaHumanMethylation450kmanifest", "IlluminaHumanMethylationEPICmanifest"))'
Rscript -e 'source("https://bioconductor.org/biocLite.R"); biocLite(pkgs=c("DEXSeq","impute","wateRmelon","methylumi"))'
Rscript -e 'install.packages(c("gam","Hmisc","devtools","MASS","lmtest","markdown","Cairo","knitr","doParallel","compareGroups","MatrixEQTL","plyr","dplyr","matrixStats","sandwich","ggplot2","glmnet","parallel"))'
Collection
- Name: albafsanles/cellcount_epic
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/albafsanles-cellcount_epic-latest |
collection name | albafsanles/cellcount_epic |
branch | master |
tag | latest |
commit | 2ccaf90c1ebffcdf65b5069421769d9c0d02794e |
version (container hash) | ea859d14b43329d6ae21c1a88a161094 |
build date | 2019-05-18T10:56:40.595Z |
size (MB) | 1857 |
size (bytes) | 686436383 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.